Blast

Sample .ncbirc

[NCBI]
Data=/usr/share/ncbi/data

[BLAST]
BLASTDB=/usr/local/databases/blast
BLASTMAT=/usr/share/ncbi/data

• formatdb e.g.:

formatdb -i pdbaa -o T
mv pdbaa.p* /usr/local/databases/blast

• run blastall e.g.:

blastall -d pdbaa -i myseq -o myblast -F F -e 1e-5

• Help:

formatdb - | less
blastall - | less